PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015902753.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 205aa MW: 23191.8 Da PI: 8.5632

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015902753.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130	1e-40	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C+k+C+lapyfpae++k+f+n+h+lFG++n++++lk++p++++edam+s+++e+++ra+ Pv+G++g+i++l+ ql+q+ +el XP_015902753.1 10 ACAACKYQRRRCSKECALAPYFPAEKAKEFQNAHRLFGVRNIMNILKQVPPQHKEDAMTSIIFESDMRAQYPVRGCMGIISQLHLQLQQSIEELR 104 7********************************************************************************************** PP DUF260 96 llkee 100 l++++ XP_015902753.1 105 LVQTK 109 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.868	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-38	10	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MTIKGGTSQA CAACKYQRRR CSKECALAPY FPAEKAKEFQ NAHRLFGVRN IMNILKQVPP 60 QHKEDAMTSI IFESDMRAQY PVRGCMGIIS QLHLQLQQSI EELRLVQTKL AICKEQCQYQ 120 IPLSPSNFLP QLHLGMNSKN DALPIHHHPQ YNCVGGEMAI EFLGNNGIAT TTSMTNTIMN 180 GIYIEAEDNN MVKPLRNQSP YYSRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-28	6	110	7	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-28	6	110	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015902753.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024923797.1	1e-151	LOB domain-containing protein 27-like
Refseq	XP_024929018.1	1e-151	LOB domain-containing protein 27-like
Refseq	XP_024929022.1	1e-151	LOB domain-containing protein 27-like
Swissprot	Q9STS6	2e-38	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A314YJA1	5e-72	A0A314YJA1_PRUYE; LOB domain-containing protein 27-like
STRING	XP_008230975.1	2e-72	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4415	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	5e-36	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]