PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015903047.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 251aa    MW: 28913 Da    PI: 8.3549
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015903047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.1e-1213713799
                    EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    t++ ++gr W++ +  +k +gr+v+ +GW+eFv+ + +++g f+vF++dg s+f  +v ++++
  XP_015903047.1 13 TITVPNGRIWKLDF--QKLGGRIVFVDGWQEFVEYHSIDSGYFLVFRYDGFSKF--HVCILDE 71
                    566799********..********************************988888..9999876 PP
2B350.53.6e-161572401296
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++ l +p  f+ ++++   +s+ +t  + +g++W+v+++    ++ +r+ ++kGW++Fv++n+L +gD++vF+l+ ++ + l+v++
  XP_015903047.1 157 HNKYLHVPMGFVMTYMQG--CSQVIT-LTCNGKKWQVTFSLkeHRTVNRIRISKGWRGFVRDNNLGAGDVCVFELIMKKATLLKVSI 240
                     5667999*****999744..775555.667*********995556666699***********************9976666566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.407172IPR003340B3 DNA binding domain
SMARTSM010190.19572IPR003340B3 DNA binding domain
CDDcd100176.17E-111070No hitNo description
SuperFamilySSF1019361.04E-141279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-141381IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-91370IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281146244IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19146241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-18147241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-17148241No hitNo description
SMARTSM010195.5E-11149244IPR003340B3 DNA binding domain
PfamPF023623.9E-14156240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNINFVGGIV FATITVPNGR IWKLDFQKLG GRIVFVDGWQ EFVEYHSIDS GYFLVFRYDG  60
FSKFHVCILD ESGTEIYYPW NAARSDVEPH SDKESSEDHD QDNEDDDDDD VEIIDNKMFA  120
SRRLSRRQMS MKNKRAIRAA TSCKYAHPSF IVLLSGHNKY LHVPMGFVMT YMQGCSQVIT  180
LTCNGKKWQV TFSLKEHRTV NRIRISKGWR GFVRDNNLGA GDVCVFELIM KKATLLKVSI  240
YYADQAKKCS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1511724515144B3 domain-containing transcription factor VRN1
4i1k_B6e-1511724515144B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015903047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015903047.10.0B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein