PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015903096.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 305aa    MW: 34205.9 Da    PI: 6.7123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015903096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.9e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+  Ed++l +++k++G g W+  +++ g++R++k+c++rw++yl
   XP_015903096.1 15 RGAWSSMEDQILTEYIKLHGEGKWRGLPQRAGLRRCGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding51.22.9e-1668111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ +lG++ W++Ia +++ gRt++++k++w++
   XP_015903096.1  68 RGNITPEEEDLIIRLHSLLGNR-WALIAGRLP-GRTDNEIKNYWHT 111
                      7999******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2741062IPR017930Myb domain
SuperFamilySSF466895.47E-2812109IPR009057Homeodomain-like
SMARTSM007177.5E-121464IPR001005SANT/Myb domain
PfamPF002491.1E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-211669IPR009057Homeodomain-like
CDDcd001678.81E-91762No hitNo description
PROSITE profilePS5129424.4963117IPR017930Myb domain
SMARTSM007173.9E-1567115IPR001005SANT/Myb domain
PfamPF002491.0E-1468111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2370115IPR009057Homeodomain-like
CDDcd001673.30E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRKPCCSKE AGLNRGAWSS MEDQILTEYI KLHGEGKWRG LPQRAGLRRC GKSCRLRWLN  60
YLRPTIKRGN ITPEEEDLII RLHSLLGNRW ALIAGRLPGR TDNEIKNYWH TKIAKTAKAQ  120
QIPNVTTNQP ISEAAQLHST AAIKPRVVRT KATRCTKAVI IPFLAQDGLV HNNEPAAAVA  180
AGPTTSRSSM VDHDHEYGKT SAGTESLLSP LMMISEKENE MSCSFIRDFD FELEEHLLSD  240
FFNEDLVGFP SDFGNRVEIN DASRKSEEKL LLTSEDELLD CSDLQTMAAL IDSDLDWLQV  300
LSKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231311525126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015903096.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015903096.10.0transcription factor TT2-like
TrEMBLA0A2N9ETC31e-87A0A2N9ETC3_FAGSY; Uncharacterized protein
STRINGXP_008228205.16e-85(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-60myb domain protein 3