PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016432620.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 257aa    MW: 28934.1 Da    PI: 9.3022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016432620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-1267118154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ +hn+ Er RR+  Ns  + Lr+llP  +   + kKls  +++ ++++YI +L
  XP_016432620.1  67 KKLNHNASERDRRKVFNSLCSSLRSLLPAtD---HTKKLSFPATVARVIKYIPDL 118
                     6789*************************55...7777**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.60166118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-967118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1167132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1267135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-672124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMAVSSPLFS NFGVCLADPK NQEVNTIEAP VSRGINIIPV HYSSSQPSIV HSEFKNFDRD  60
HLDGTVKKLN HNASERDRRK VFNSLCSSLR SLLPATDHTK KLSFPATVAR VIKYIPDLKK  120
DVERLTQKKE DLTLRSIPKK EYSADFNKQT IRGGIQSSLS VISANQVGNR EVIIHISILK  180
INKSSFAEAV SELEDEGLLL LNASSFETLG DRVFYNLHFQ AQGTLPINVQ ILRDKLLSYY  240
EKEDKLLPPW ISGFFTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432620.10.0PREDICTED: transcription factor ORG2-like
TrEMBLA0A1S3WY530.0A0A1S3WY53_TOBAC; transcription factor ORG2-like
STRINGXP_009616456.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-47bHLH family protein