PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435125.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 968aa    MW: 108472 Da    PI: 6.2688
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.92.3e-54171313116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwlk+ e++ iL n+e+h+l++e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+nptfqr
  XP_016435125.1  17 REaQIRWLKPAEVLFILRNHENHQLSNEAAQKPPSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEQNPTFQR 111
                     55589****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ ++e+ivlvhy++
  XP_016435125.1 112 RSYWMLDPAYEHIVLVHYRD 131
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.26212138IPR005559CG-1 DNA-binding domain
SMARTSM010764.6E-7615133IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4718131IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.0E-9398486IPR013783Immunoglobulin-like fold
PfamPF018334.6E-9400482IPR002909IPT domain
SuperFamilySSF812969.66E-18401483IPR014756Immunoglobulin E-set
CDDcd001023.93E-5402484No hitNo description
Gene3DG3DSA:1.25.40.207.3E-13597692IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.939598690IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-13602692IPR020683Ankyrin repeat-containing domain
CDDcd002042.63E-11618690No hitNo description
SMARTSM002480.0038631660IPR002110Ankyrin repeat
PROSITE profilePS5008811.06631663IPR002110Ankyrin repeat
PfamPF136374.1E-5633689No hitNo description
SMARTSM0001515748770IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638749778IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-5800855IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.4807829IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529808837IPR000048IQ motif, EF-hand binding site
PfamPF006120.014810828IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0056830852IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791832856IPR000048IQ motif, EF-hand binding site
PfamPF006126.1E-5833852IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
QLLLFYFSGY DINDLVREAQ IRWLKPAEVL FILRNHENHQ LSNEAAQKPP SGSLFLFNKR  60
VLRFFRKDGH SWRKKKDGRT VGEAHERLKV GNAEALNCYY AHGEQNPTFQ RRSYWMLDPA  120
YEHIVLVHYR DITEGRQNPA FMSESSPISS TFSPSPSSYS TQQTGSTLIA GESYEQYQNQ  180
SSPGEICSDA VINNNGMSDI IGRTKEVMSS PGLEMSQALR RLEEQLSLND DSFKEIDPLY  240
ADAISDDSSL VEMQGNSNSL LLQHHSAESS ESHHQHLTQD GHVWKDMLDH YGVSTAAESL  300
TKSLPKLDEN GMLQISSERG AIEAYQSYKW PNFSEKEAQK APIPAFKQLE NFKYPAYSPG  360
VTAFGSNSDQ CTTIFDQDQI GTSFEDEMSL TISQKQKFTF RDISPDWGYS SEATKVVIIG  420
SFLCNPSECM WTCMFGDSEV PVQIIQEGVI CCQAPPHLPG KVTLCVTSGN RESCSEVKEF  480
EYRDKPDDCA RNNRSDVEGA YKSTEELLLL VRFVQLLLLD LSAQKEDSSM LSNDFLEKCK  540
ANEDSWSQVI ESLLFGTSTS TITIDWLLQE LLKDKFQQWL SYKLQRKDNQ MGCSLSKKEQ  600
GIIHMVSGLG FEWALHPILN AAVSVNFRDI NGWTALHWAA RFGREKMVAS LIASGASAGA  660
VTDPSSRDPV GKTAASIASS CGHKGLAGYL SEVALTSHLS SLTLEESELS KGTADVEAEK  720
TISSISNTSA TTNEDQRSLK DSLAAVRNAA QAAARIQSAF RAHSFRKRQQ RESAVTATAS  780
GDEYGILSNN IHGLSAASKW AFRNTRDYNS AALAIQKKYR GWKGRKDFLA FRQKVVKIQA  840
HVRGYQVRKQ YKVCWAVGIL EKVVLRWRRR GVGLRGFRHD TESIDESEDE DILKVFRKQK  900
VDAALDEAVS RVLSMVESPG ARQQYHRILE KYRQAKAELE GAESESASTA HGDMSNMEND  960
DIYQFSSY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660480.0JN566048.1 Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435125.10.0PREDICTED: calmodulin-binding transcription activator 4-like, partial
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1S3X5640.0A0A1S3X564_TOBAC; calmodulin-binding transcription activator 4-like
STRINGXP_009617256.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]