PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016435166.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 250aa MW: 28277.8 Da PI: 9.9716

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016435166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.9	1.2e-15	11	99	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv++p + ++ l++p f+ + +g+k e + tl++ +W+v + +++++ +++ kGW++Fv+ +Lk gDf vF++ g+++f v++ XP_016435166.1 11 FFKVMVP---GFHAKLTIPPAFCLKLKGEKSE--KGTLKH-GKGTWNVGI--GRSKNGvMWFDKGWEQFVQNYNLKIGDFAVFEHLGNMNF--SVSL 97 6777744...456679*****999887555..566666.4569*..777777799**********************999999..7777 PP E- CS B3 97 fr 98 ++ XP_016435166.1 98 LD 99 66 PP
2	B3	51.6	1.6e-16	163	238	14	88
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 l +p +f+ ++ + +++t+tl+ +sg s v l+++ ++++ +++t+GW++F ++n+Lk+gD+++F+ d++ s XP_016435166.1 163 PYLHIPTEFCHSNALL--QNTTITLTGPSGISCPVSLRICPGGKTlyVIMTTGWRDFFSSNKLKVGDVCIFQIDRTnS 238 4589****999877..6779***********8877777798999********************887634 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.617	8	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-20	9	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.26E-15	9	99	No hit	No description
SuperFamily	SSF101936	3.53E-18	10	103	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-12	11	98	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-14	11	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.3E-17	146	244	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.19E-17	148	235	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.5E-6	149	242	IPR003340	B3 DNA binding domain
CDD	cd10017	4.35E-15	149	238	No hit	No description
PROSITE profile	PS50863	11.11	150	250	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-14	164	239	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MENELPISRR FFKVMVPGFH AKLTIPPAFC LKLKGEKSEK GTLKHGKGTW NVGIGRSKNG 60 VMWFDKGWEQ FVQNYNLKIG DFAVFEHLGN MNFSVSLLDS TGCDKKFLML EDGKQQVPSQ 120 VKSPECRIEK RKPEGDVLIH QYVKGSSEFT ARIKEYNVRK RSPYLHIPTE FCHSNALLQN 180 TTITLTGPSG ISCPVSLRIC PGGKTLYVIM TTGWRDFFSS NKLKVGDVCI FQIDRTNSDS 240 KSITMNVRVM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016435166.1	0.0	PREDICTED: putative B3 domain-containing protein REM15 isoform X1
TrEMBL	A0A1S3X5P5	0.0	A0A1S3X5P5_TOBAC; putative B3 domain-containing protein REM15 isoform X1
STRING	XP_009619629.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	1e-22	B3 family protein