PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435167.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 170aa    MW: 19554.7 Da    PI: 10.277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.8e-161199198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffkv++p   + ++ l++p  f+ + +g+k e  + tl++    +W+v +   +++++ +++ kGW++Fv+  +Lk gDf vF++ g+++f   v++
  XP_016435167.1 11 FFKVMVP---GFHAKLTIPPAFCLKLKGEKSE--KGTLKH-GKGTWNVGI--GRSKNGvMWFDKGWEQFVQNYNLKIGDFAVFEHLGNMNF--SVSL 97
                    6777744...456679*******999887555..566666.4569*****..777777799************************999999..7777 PP

                    E- CS
              B3 97 fr 98
                    ++
  XP_016435167.1 98 LD 99
                    66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.6178101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-219103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-15999No hitNo description
SuperFamilySSF1019361.37E-1810103IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1411101IPR003340B3 DNA binding domain
PfamPF023624.6E-131198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MENELPISRR FFKVMVPGFH AKLTIPPAFC LKLKGEKSEK GTLKHGKGTW NVGIGRSKNG  60
VMWFDKGWEQ FVQNYNLKIG DFAVFEHLGN MNFSVSLLDS TGCDKKFLML EDGKQQVPSQ  120
VKSPECRIEK RKPEGDVLIH QYVKGSSEFT ARIKEYNVRK RSPYLLLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435167.11e-125PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A1S3X5L51e-123A0A1S3X5L5_TOBAC; B3 domain-containing protein Os01g0723500-like isoform X2
STRINGXP_009619629.11e-118(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-15B3 family protein