PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435745.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 163aa    MW: 18534.1 Da    PI: 9.855
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.79.3e-1429107291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+e+A+  GFsv k++s+k+   ++    t++C +   r+ + ++          +  +Cka+l   ++++g w+v+k++++HnH+l p
  XP_016435745.1  29 FYKEHARLRGFSVIKRNSNKK-GGDTARYITYCCDRTRIRRIKFTT----------KTNNCKARLATVLDDSGCWRVSKVVHDHNHDLLP 107
                     9***************99998.55558899******9999887665..........7789***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1129107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MENEFTEEDV VVGPISGMRF RDKDTLFAFY KEHARLRGFS VIKRNSNKKG GDTARYITYC  60
CDRTRIRRIK FTTKTNNCKA RLATVLDDSG CWRVSKVVHD HNHDLLPSVS HLMAGHGSVC  120
DSLKRDLVAH DRSGIRPSKN IRLDEVQRGG PQNLGCTPKD CRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754465e-37HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435745.11e-119PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S3X6Y01e-118A0A1S3X6Y0_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009787995.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-11FAR1-related sequence 5