PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436102.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 201aa    MW: 21779 Da    PI: 4.3517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-153886255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++G+r++  + +Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  XP_016436102.1 38 NFRGIRQR--NCKWVSEIREPRK---TTRIWLGTFSTPEMAAAAYDVAALALKG 86
                    589**976..58********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-93786IPR001471AP2/ERF domain
CDDcd000183.89E-183796No hitNo description
SMARTSM003803.5E-3038100IPR001471AP2/ERF domain
PROSITE profilePS5103218.9133894IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-273896IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-173996IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MADHFFDVTP SDNPPPSENF SPTGSASGNV LSPRRHPNFR GIRQRNCKWV SEIREPRKTT  60
RIWLGTFSTP EMAAAAYDVA ALALKGPDAP LNFPDSAYSY PVPASLSATD IRAAAANAAA  120
ARAPPISESN SHEVLAETEN YEGASTTVAA TFVDEEEIFG MPKLLDEMAE AMLVSPPRMH  180
QSTSYDESPE NSDADSLWSY P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792399.11e-145PREDICTED: ethylene-responsive transcription factor ERF027-like
RefseqXP_016436102.11e-145PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ903e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S3X8821e-144A0A1S3X882_TOBAC; ethylene-responsive transcription factor ERF027-like
TrEMBLA0A1U7XZJ21e-144A0A1U7XZJ2_NICSY; ethylene-responsive transcription factor ERF027-like
STRINGXP_009792399.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-46ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]