PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436262.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 165aa    MW: 17950 Da    PI: 5.3296
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.62.8e-5626123198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vre+dr+lPian++rimkk+lPanaki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddl+wal+tlGfedy+eplk+yl +yre+eg
  XP_016436262.1  26 VREHDRYLPIANIGRIMKKALPANAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLVWALTTLGFEDYIEPLKAYLIRYREMEG 120
                     589******************************************************************************************** PP

           NF-YB  96 ekk 98 
                     ++k
  XP_016436262.1 121 DTK 123
                     975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.4E-5323128IPR009072Histone-fold
SuperFamilySSF471132.64E-3930129IPR009072Histone-fold
PfamPF008081.1E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-196078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-197997No hitNo description
PRINTSPR006152.2E-1998116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAEAPASPGG GGSHESGGER SPQSNVREHD RYLPIANIGR IMKKALPANA KIAKEAKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLVWALTTLG FEDYIEPLKA YLIRYREMEG  120
DTKGSARGGD APARKDIVGG QLDSSTQFVY EGSFSHGLDY GNSQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4626117192Transcription factor HapC (Eurofung)
4g92_B2e-4626117192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754432e-58HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771322.11e-121PREDICTED: nuclear transcription factor Y subunit B-10-like
RefseqXP_016436262.11e-121PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK43e-78NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1S3X8P21e-119A0A1S3X8P2_TOBAC; nuclear transcription factor Y subunit B-10-like
TrEMBLA0A1U7VTW41e-119A0A1U7VTW4_NICSY; nuclear transcription factor Y subunit B-10-like
STRINGXP_009771322.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.13e-73nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]