PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436636.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 346aa    MW: 38739.8 Da    PI: 7.8555
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-51131441129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     lppGfrFhP+deel+++yL +kv+g+  e ++    + evd++k+ePw++p+ +  + kewyf+s+rd+kyatg r+nrat sgyWkatgkd+++
  XP_016436636.1  13 LPPGFRFHPRDEELICDYLMNKVAGSGSESDRhypLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATISGYWKATGKDRAI 107
                     79***********************99666443335899************7666789************************************* PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++k++ lvg++ktLvfy+grapkg+ktdWvmhe+rle
  XP_016436636.1 108 MRKGSCLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 144
                     **********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-583172IPR003441NAC domain
PROSITE profilePS5100556.09213171IPR003441NAC domain
PfamPF023653.2E-2614143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSSSSLSMVE SKLPPGFRFH PRDEELICDY LMNKVAGSGS ESDRHYPLLI EVDLNKSEPW  60
EIPEVACVGG KEWYFYSQRD RKYATGLRTN RATISGYWKA TGKDRAIMRK GSCLVGMRKT  120
LVFYQGRAPK GRKTDWVMHE FRLEGLCKNY VLTLLYKMKQ EDWVLCRVFH KNKELLATKQ  180
GAGSSIYHEH DTISSSSLPP LMDPYITFDQ TQPNNININT INMNELYYEQ VPCFSIFNPN  240
QTFISHSHHL PTTTTAGATG AFGGLPADIG TYLNAAATSS SCENKVIKAV LSHLNIMEGS  300
HNNINNPAHN IVNIKAGGSP TSFGEGSSET SFLSEVGLTT MWNNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-5211743171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436636.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-105NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1S3X9P60.0A0A1S3X9P6_TOBAC; NAC domain-containing protein 21/22-like
STRINGXP_009782234.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-103NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]