PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016436652.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 180aa MW: 20582.8 Da PI: 10.1232

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.2	1.6e-11	15	57	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+ ++k+ +v +s+ ++ + K A LS+LC++++a+iifs t XP_016436652.1 15 KFLKDKRAEKVALSNKQKALSKRAMDLSILCGIDIAIIIFSIT 57 57789999********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0036	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.778	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-14	9	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-6	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-9	18	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-6	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-6	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MARMTSQMKN KSEKKFLKDK RAEKVALSNK QKALSKRAMD LSILCGIDIA IIIFSITAER 60 FIFGNSNVES VVERFSQAKQ PFYRMLSRKT THEKAGCGDE NDTMKKKKKK AINEKEKGES 120 TLEIFNPTNL ERLEKLKQEI DELERDLTEK IEEVRSKIGV TDPKFVPEMN ATMSSAMPSN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436652.1	1e-128	PREDICTED: MADS-box transcription factor 23-like
TrEMBL	A0A1S3X9R6	1e-127	A0A1S3X9R6_TOBAC; MADS-box transcription factor 23-like
STRING	XP_009597574.1	1e-100	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58