PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016436660.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1046aa MW: 113660 Da PI: 5.3658

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_016436660.1 601 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 652 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	591	672	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-20	950	1036	No hit	No description
PROSITE profile	PS51745	19.935	951	1033	IPR000270	PB1 domain
SMART	SM00666	6.1E-23	951	1033	IPR000270	PB1 domain
CDD	cd06407	1.04E-31	952	1032	No hit	No description
Pfam	PF00564	2.7E-16	952	1032	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.8E-22	952	1032	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence Send to blast
MSEPEEKITS KNPRPKSKEF SSPPPQQPPH TAMEKESTTM MMDLDIDASW SFDQIFAAAA 60 AVSSNPTSPF LPCSPLWGFS DDIEEKPAGN SFSGALRFSG HPRFGATYTD DPEATTETVS 120 VNADKGRLPS PVLELAPRDY PNGSCIIKER MTQALRYFKE STGERVLAQV WAPVKDAGRY 180 VLTTSGQPFV LDPDCNGLHQ YRTVSLMYMF AADGETGGVL GLPGRVFRLK LPEWTPNVQY 240 YSSKEFPRLD HALHYNVRGT LALPVFEPSG QSCLGVLELI MTSQKINYAA EVDKVCKALE 300 TVNLKSSEIL DHPNTQICNE GRQNALVEIL EILTAVCETY QLPLAQTWVP CRHRSVLADG 360 GGLKKSCSSF DGSCMGQICM STTDVAFYVV DAHMWGFREA CAEHHLQKGQ GVAGRAYASQ 420 KSCFCEDITQ FCKTEYPLVH YARLFGLTSC FAICLRSSHT GNDDYILEFF LPPNSGDYSD 480 QQALLNSLLL TMKQHFRSLS IASGGELEHD WSSVEIIKAS IEEKIDAKPE SVSAPKSLPQ 540 PTRLPNGWTN LDPLGEQQFS VESDVAKGAG SKCGTGEAPN HVSPSDNKPT GKKSERKRGK 600 AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK 660 CVIESVQGTE GAFTLTSLAP NSFPAAVGSI SWPACASGSN LPSSPLSKPS VFPEEKNEFS 720 NHGTPESHEE AEPSNQMLGG RVTRKEEFTP QNGFLYAEGS HKSRTGSVSR EESAGTPTSQ 780 GSCQGSPSAG NEFSPQNDLV NSPAREACMK ASAGTPTSQG SCQGSPSAGN EFSPQNDLVN 840 SPAHEACMKV GGSLEAAHQT TTENNLAAAF LIPRPFIPER AQEPFGGMLV EDAGSSHDLR 900 NLCSAGEAQV DERVPEYSLP NPPFSDAIAK DPVYVPADTT PQYSAWPEVT FVTIKAAYRE 960 DIIRFRLCLN SGIVKLKEEV AKRLKLELGT FDIKYLDDDL EVVSISCDAD LQECVDISLS 1020 SGSSIVRLLV HDIMSNLGSS CESSGK

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence Send to blast

MSEPEEKITS KNPRPKSKEF SSPPPQQPPH TAMEKESTTM MMDLDIDASW SFDQIFAAAA  60
AVSSNPTSPF LPCSPLWGFS DDIEEKPAGN SFSGALRFSG HPRFGATYTD DPEATTETVS  120
VNADKGRLPS PVLELAPRDY PNGSCIIKER MTQALRYFKE STGERVLAQV WAPVKDAGRY  180
VLTTSGQPFV LDPDCNGLHQ YRTVSLMYMF AADGETGGVL GLPGRVFRLK LPEWTPNVQY  240
YSSKEFPRLD HALHYNVRGT LALPVFEPSG QSCLGVLELI MTSQKINYAA EVDKVCKALE  300
TVNLKSSEIL DHPNTQICNE GRQNALVEIL EILTAVCETY QLPLAQTWVP CRHRSVLADG  360
GGLKKSCSSF DGSCMGQICM STTDVAFYVV DAHMWGFREA CAEHHLQKGQ GVAGRAYASQ  420
KSCFCEDITQ FCKTEYPLVH YARLFGLTSC FAICLRSSHT GNDDYILEFF LPPNSGDYSD  480
QQALLNSLLL TMKQHFRSLS IASGGELEHD WSSVEIIKAS IEEKIDAKPE SVSAPKSLPQ  540
PTRLPNGWTN LDPLGEQQFS VESDVAKGAG SKCGTGEAPN HVSPSDNKPT GKKSERKRGK  600
AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK  660
CVIESVQGTE GAFTLTSLAP NSFPAAVGSI SWPACASGSN LPSSPLSKPS VFPEEKNEFS  720
NHGTPESHEE AEPSNQMLGG RVTRKEEFTP QNGFLYAEGS HKSRTGSVSR EESAGTPTSQ  780
GSCQGSPSAG NEFSPQNDLV NSPAREACMK ASAGTPTSQG SCQGSPSAGN EFSPQNDLVN  840
SPAHEACMKV GGSLEAAHQT TTENNLAAAF LIPRPFIPER AQEPFGGMLV EDAGSSHDLR  900
NLCSAGEAQV DERVPEYSLP NPPFSDAIAK DPVYVPADTT PQYSAWPEVT FVTIKAAYRE  960
DIIRFRLCLN SGIVKLKEEV AKRLKLELGT FDIKYLDDDL EVVSISCDAD LQECVDISLS  1020
SGSSIVRLLV HDIMSNLGSS CESSGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436660.1	0.0	PREDICTED: protein NLP6-like isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3X9P7	0.0	A0A1S3X9P7_TOBAC; protein NLP6-like isoform X2
STRING	XP_009599820.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]