PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436673.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 551aa    MW: 60689.6 Da    PI: 6.5107
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.3e-31313371259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  XP_016436673.1 313 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKTILITTYEGNHNHP 371
                     7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-34297373IPR003657WRKY domain
SuperFamilySSF1182908.76E-28305373IPR003657WRKY domain
PROSITE profilePS5081129.838307373IPR003657WRKY domain
SMARTSM007746.5E-37312372IPR003657WRKY domain
PfamPF031068.8E-27314371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MVVDSSLIQI PQHSFFNISH QRTTIFSPNY SSLNLFYHPI NYNIMESPTK NMSSPPPTTI  60
QFPVNLFDGH DQKRPLLDEM DFFAAKEDGN CKDTDERKEF NKPLELDFNI NTGLQLLTAN  120
TSSDQSIVED GLSPASSEDR RTKTELAVLQ AELERMNGEN RHLRDVLNQV TTNCSTLQMQ  180
LTMIKQKQQH DHNEQDDKGE EIKQQYQSSQ MRPRQFMDLG RLADEPSLSS SEGRRSWEQS  240
RSPPMNVVES GSTDREDSPE KGLSCWGPNK VPRVAGNESK SREDSTTVDQ ATEATIRKAR  300
VSVRARSEAP MITDGCQWRK YGQKMAKGNP CPRAYYRCTM AAGCPVRKQV QRCAEDKTIL  360
ITTYEGNHNH PLPPAAAAMA STTSSAARML LSGSMASADG SMSSNILART LLPCSSSMAT  420
ISASTPFPTI TLDLTQTSNP SQFKGPSNLF QFPFQNPHQN SPTNPIALLP QIFGQALYNQ  480
SKFSGLQMSQ NLSTLPSIGD TVNALTADPN FAAALAVAVT SLIGNSHHSN NVTNNNTAAA  540
TTPSNNNDTN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22299375176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436673.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-136WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1S3XA820.0A0A1S3XA82_TOBAC; probable WRKY transcription factor 31
STRINGXP_009616884.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-123WRKY family protein