PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436915.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 252aa    MW: 29061.7 Da    PI: 9.8015
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63e-50141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF+Ptdeelvv+yLk+kv + +l++ ++i+ev+i+k++PwdLp     +e+e yfFs+r+ ky++g+r+nrat+sgyWkatg dk+++s 
  XP_016436915.1  14 LPPGFRFRPTDEELVVQYLKRKVLSFPLPA-SIIPEVEIHKSDPWDLP---GDSEQERYFFSTREVKYPNGNRSNRATNSGYWKATGIDKQIVSC 104
                     79****************************.89***************...3467899**********************************997 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++lvglkktLvfy+g++p+g +t+W+mheyrl
  XP_016436915.1 105 kGQQLVGLKKTLVFYRGKSPHGCRTNWIMHEYRL 138
                     46777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-589165IPR003441NAC domain
PROSITE profilePS5100557.92814165IPR003441NAC domain
PfamPF023658.9E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEKLSFVKNG VLRLPPGFRF RPTDEELVVQ YLKRKVLSFP LPASIIPEVE IHKSDPWDLP  60
GDSEQERYFF STREVKYPNG NRSNRATNSG YWKATGIDKQ IVSCKGQQLV GLKKTLVFYR  120
GKSPHGCRTN WIMHEYRLAN LETTSIQAKN NLTQEKWVLC RIFLKRRDSK NEEENITHEV  180
FNSRNTRANS GNKKKPVFYD FMAREGEDLN GSVAASTSFS GSSGITHELT TNESDDHEES  240
SSFTTFRRKQ WP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-531217015170NO APICAL MERISTEM PROTEIN
1ut4_B6e-531217015170NO APICAL MERISTEM PROTEIN
1ut7_A6e-531217015170NO APICAL MERISTEM PROTEIN
1ut7_B6e-531217015170NO APICAL MERISTEM PROTEIN
4dul_A6e-531217015170NAC domain-containing protein 19
4dul_B6e-531217015170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436915.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY937e-92NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1S3XAF50.0A0A1S3XAF5_TOBAC; NAC domain-containing protein 83-like
STRINGXP_009590289.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-93NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]