PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437360.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 169aa    MW: 19767.3 Da    PI: 6.8969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-104282954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  XP_016437360.1 42 ARERRHRISDRFKILQSLVPGG-----SKMDTVTMLEEAIHYVKFL 82
                    699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1483382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-133892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-113988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-123986No hitNo description
Gene3DG3DSA:4.10.280.101.3E-123986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-74282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRQNIQQSLR IQKYFYVLSV ILEKKKKGSV VKLSTDPQSV AARERRHRIS DRFKILQSLV  60
PGGSKMDTVT MLEEAIHYVK FLKMQIWLHQ TMINIVDDYD NPNYHHQLLM AHDSNFANYY  120
PHENNSTPVE NAQINYNLDQ LQLPGYAFSD GDQFQGEETN ISGDAFMYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437360.11e-125PREDICTED: transcription factor bHLH54-like
TrEMBLA0A1S3XBQ21e-123A0A1S3XBQ2_TOBAC; transcription factor bHLH54-like
STRINGXP_009609302.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117141723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-32APRATAXIN-like