PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016437684.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 190aa MW: 21082 Da PI: 9.3876

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016437684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	224.6	2.7e-69	9	164	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 sse+vCyv+CnfCntilavsvP +s+f +vtvrCGhC++llsv+++ + q+l+ ++ +++++++++ + s+ ++s+s+ ++ + XP_016437684.1 9 ISSERVCYVHCNFCNTILAVSVPCSSIFAIVTVRCGHCANLLSVSMQSSLQALPLQDP--------QKQQRQQSNVENASKACGSSSSSKCNRFS 95 689*************************************************9996........22222222222222222222333333333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + + pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdi+hr+afs+aaknWahfP+ihfgl XP_016437684.1 96 AID-YSPQIEPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHRQAFSTAAKNWAHFPHIHFGL 164 333.34455688888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-72	10	164	IPR006780	YABBY protein
SuperFamily	SSF47095	8.77E-8	108	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	113	156	IPR009071	High mobility group box domain
CDD	cd00084	3.39E-4	118	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSLDMTSSIS SERVCYVHCN FCNTILAVSV PCSSIFAIVT VRCGHCANLL SVSMQSSLQA 60 LPLQDPQKQQ RQQSNVENAS KACGSSSSSK CNRFSAIDYS PQIEPRITPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ITHRQAFSTA AKNWAHFPHI HFGLKLEGNK QAKLDHAVAG 180 ESPHKSLGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ767669	0.0	KJ767669.1 Nicotiana tabacum FAS protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626437.1	1e-140	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016437684.1	1e-140	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q9XFB0	3e-75	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S3XCY1	1e-139	A0A1S3XCY1_TOBAC; axial regulator YABBY 5-like
STRING	XP_009626437.1	1e-139	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	8e-59	YABBY family protein

Link Out ? help Back to Top
Entrez Gene	107821376

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]