PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016437762.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 182aa MW: 20729.4 Da PI: 10.0737

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016437762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103	1.7e-32	103	161	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk++++prsYY+Ct++gC+vkk+v+r ++d+ vv++tYeg H+h+ XP_016437762.1 103 LDDGYRWRKYGQKAVKNNNYPRSYYKCTHQGCNVKKQVQRLSKDEGVVVTTYEGMHTHP 161 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-34	88	161	IPR003657	WRKY domain
SuperFamily	SSF118290	1.09E-29	95	162	IPR003657	WRKY domain
PROSITE profile	PS50811	30.102	98	163	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	103	162	IPR003657	WRKY domain
Pfam	PF03106	2.4E-26	104	161	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MENQSMPFLG STSCVRTISS DSFSNSINIG YNSMNGWTSG LKTEISNSTA REQNITNIKN 60 SLMGVVSSEI HTTNIISSLK KKGDKKIKKP RFAFQTRSQV DILDDGYRWR KYGQKAVKNN 120 NYPRSYYKCT HQGCNVKKQV QRLSKDEGVV VTTYEGMHTH PIDKPTDNFE QILHQMHIIP 180 PH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	93	162	7	76	Probable WRKY transcription factor 4
2lex_A	1e-28	93	162	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SI37}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	7e-52	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788059.1	1e-135	PREDICTED: probable WRKY transcription factor 43
Refseq	XP_016437762.1	1e-135	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q9S763	4e-51	WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBL	A0A1S3XCY2	1e-134	A0A1S3XCY2_TOBAC; probable WRKY transcription factor 43
TrEMBL	A0A1U7XM87	1e-134	A0A1U7XM87_NICSY; probable WRKY transcription factor 43
STRING	XP_009788059.1	1e-135	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01970.1	6e-53	WRKY DNA-binding protein 45

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen L,Xiang S,Chen Y,Li D,Yu D Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence. Mol Plant, 2017. 10(9): p. 1174-1189 [PMID:28735023]