PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437905.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 119aa    MW: 13645.5 Da    PI: 8.8452
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer71.31.5e-221059457
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                    v+Y eC++N Aas  g+a+DGCgEf+p+    g +++l CaAC CHR+FHR+ +
  XP_016437905.1 10 VKYGECKHNYAASAMGYALDGCGEFCPN----GIPESLICAACHCHRSFHRKME 59
                    79*************************9....889****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-191058IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-111065IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-191157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.1611258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MATNNKHFLV KYGECKHNYA ASAMGYALDG CGEFCPNGIP ESLICAACHC HRSFHRKMEM  60
EIPVLSKSHH NHGTSLVIVV PPTPSQQQSR IHPRQTYDKN NVVATHHREQ RQRRWAEER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437905.18e-87PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBLA0A1S3XD842e-85A0A1S3XD84_TOBAC; zinc-finger homeodomain protein 6-like
STRINGXP_009799887.11e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108891118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-16mini zinc finger 2