PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016438108.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

EIL

Protein Properties

Length: 301aa MW: 34861.3 Da PI: 9.0953

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016438108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	375.1	1.2e-114	32	287	2	258
XXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 2 elkkrmwkdqmllkrlkerkkqlledkeaa....tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 +lk+rmwkd+m++++lk +k+ ++ + +++ + s+ +eq+rrkkmsr+QD++LkYM+k+me+c+ qGfvYgi+pekgkpv+g+sdsLr XP_016438108.1 32 DLKRRMWKDRMRMQKLKTKKEINTSTCSKDllegDEDDDSQAKEEQSRRKKMSRSQDSVLKYMVKIMEICKGQGFVYGIVPEKGKPVTGSSDSLR 126 9*****************998877777766644445566899*********************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT-- CS EIN3 93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelgls 187 +WWkekv+f++n+paai+ +l+ + +++s h l++lqDTtlgSLLsalmqhc ppqrrfpl++g++pPWWPtGkelwwg +g++ XP_016438108.1 127 EWWKEKVRFEQNAPAAIATFL-PKLVEV----NILDPNSCMHLLQDLQDTTLGSLLSALMQHCIPPQRRFPLDRGLPPPWWPTGKELWWGDQGFA 216 **************993.445533....234689999************************************************** PP TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S- CS EIN3 188 kdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekeca 258 ++ g+ppykkphdlkkawkvsvL+a ikhms +++++r+l+ qsk+lq+km+ake++++++v+nqee +++ XP_016438108.1 217 QKFGPPPYKKPHDLKKAWKVSVLAAIIKHMSTNLDKMRRLVKQSKSLQNKMTAKETATWSKVVNQEEVLLK 287 ****************************************************************98764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	6.9E-116	31	283	No hit	No description
Gene3D	G3DSA:1.10.3180.10	1.4E-65	160	287	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	8.37E-58	162	285	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MVEFQEIIEP LSPMSEVEEN QELDDEEINY NDLKRRMWKD RMRMQKLKTK KEINTSTCSK 60 DLLEGDEDDD SQAKEEQSRR KKMSRSQDSV LKYMVKIMEI CKGQGFVYGI VPEKGKPVTG 120 SSDSLREWWK EKVRFEQNAP AAIATFLPKL VEVNILDPNS CMHLLQDLQD TTLGSLLSAL 180 MQHCIPPQRR FPLDRGLPPP WWPTGKELWW GDQGFAQKFG PPPYKKPHDL KKAWKVSVLA 240 AIIKHMSTNL DKMRRLVKQS KSLQNKMTAK ETATWSKVVN QEEVLLKLTE KALKISTSKE 300 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	7e-60	160	287	1	128	Protein ETHYLENE INSENSITIVE 3
4zds_B	7e-60	160	287	1	128	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622228.1	0.0	PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
Refseq	XP_016438108.1	0.0	PREDICTED: ETHYLENE INSENSITIVE 3-like 5 protein, partial
Swissprot	Q9LX16	1e-124	EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBL	A0A1S3XE70	0.0	A0A1S3XE70_TOBAC; ETHYLENE INSENSITIVE 3-like 5 protein
STRING	XP_009622228.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA304	23	178

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10120.1	1e-124	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS Seed-specific expression of seven Arabidopsis promoters. Gene, 2014. 553(1): p. 17-23 [PMID:25261846]