PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016438171.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 198aa MW: 22784.4 Da PI: 7.0204

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016438171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.4	7.2e-16	116	195	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA+ GF ++k+ s+k+ + + + ++ C ++ k++++ +++r +C+a+++ +e++g w+++k++++HnH+l p XP_016438171.1 116 DFYKEYARLSGFCIVKKISNKK-GGDIVRQVQYGCDRSTKPRNKY----------VTKRRNCRARINGILEENGSWRISKVVKKHNHQLEP 195 6**************99997.6667999**999887765..........55999**************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-13	116	195	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MYGHIRRNRI RYEDIRGKVG VTSAEDKMRL SEIEMVPACA EEIRECTNGN FNDGEDHSDD 60 AAAAAADDND DDDDHYLKEE GEGGDDRKMS NEFNEKDLVI GPITRMRFNN KDVMFDFYKE 120 YARLSGFCIV KKISNKKGGD IVRQVQYGCD RSTKPRNKYV TKRRNCRARI NGILEENGSW 180 RISKVVKKHN HQLEPALS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016438171.1	1e-146	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S3XDX7	1e-144	A0A1S3XDX7_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_009621047.1	1e-127	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-09	FAR1 family protein