PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438500.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23560.9 Da    PI: 9.0893
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqvtfskRr+g+lKKA+ELS+LCda+vav++fs+++++y++ss
  XP_016438500.1  9 KRIEDKSSRQVTFSKRRKGLLKKAKELSILCDADVAVVVFSNRDRIYDFSS 59
                    79***********************************************96 PP
2K-box54.84.2e-19881701799
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + ++a      + Lq+  R+l    +++Ls+ +L +Le+qL ++l ++Rs K++l++e+i+ l++kek l+eenk L++k++
  XP_016438500.1  88 EHSKYASFMTVGQLLQTVGRQLEEPAVDDLSVTDLVHLENQLPTALMQVRSSKTHLMIESIKSLREKEKLLSEENKHLENKIA 170
                     344455566677899999**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.852161IPR002100Transcription factor, MADS-box
CDDcd002656.64E-35273No hitNo description
SuperFamilySSF554553.53E-30279IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.73985175IPR002487Transcription factor, K-box
PfamPF014868.0E-15100169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRKKVEIKR IEDKSSRQVT FSKRRKGLLK KAKELSILCD ADVAVVVFSN RDRIYDFSST  60
NSLTEIVHRY HSHVEAEKES SAEVLDTEHS KYASFMTVGQ LLQTVGRQLE EPAVDDLSVT  120
DLVHLENQLP TALMQVRSSK THLMIESIKS LREKEKLLSE ENKHLENKIA TTKNKREVKN  180
EMALDFTNLA PASMNCQQQK TTLNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20187187Myocyte-specific enhancer factor 2B
1tqe_Q3e-20187187Myocyte-specific enhancer factor 2B
1tqe_R3e-20187187Myocyte-specific enhancer factor 2B
1tqe_S3e-20187187Myocyte-specific enhancer factor 2B
6c9l_A3e-20187187Myocyte-specific enhancer factor 2B
6c9l_B3e-20187187Myocyte-specific enhancer factor 2B
6c9l_C3e-20187187Myocyte-specific enhancer factor 2B
6c9l_D3e-20187187Myocyte-specific enhancer factor 2B
6c9l_E3e-20187187Myocyte-specific enhancer factor 2B
6c9l_F3e-20187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438500.11e-150PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A1S3XF591e-148A0A1S3XF59_TOBAC; agamous-like MADS-box protein AGL27 isoform X1
STRINGXP_009595701.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.12e-40MIKC_MADS family protein