PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438502.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 169aa    MW: 19120.7 Da    PI: 9.2632
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA53.76.9e-17124159137
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                     d p+YVNaKQy++I++RRq Rakle+++kl  k+rk 
  XP_016438502.1 124 DGPIYVNAKQYHGIMRRRQIRAKLEAQNKL-VKNRKV 159
                     57****************************.999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.4E-7122165IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115218.953123169IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.2E-13126160IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860128148IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MLTLKSKEMK SLDPDLQGET LRLTHSTINS QDEMTTSKKT NSQDQCASSE YVHDERYGRD  60
MQAQIKPALF SSQNEVAHST GFSPFGYSDP YMSGLYTAYG PQAFPQMTGI APTRVPLPLD  120
LAEDGPIYVN AKQYHGIMRR RQIRAKLEAQ NKLVKNRKVF WVLSALPQF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755242e-52HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438502.11e-126PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A1S3XF481e-124A0A1S3XF48_TOBAC; nuclear transcription factor Y subunit A-3-like isoform X1
STRINGXP_009592750.11e-114(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.25e-26nuclear factor Y, subunit A3