PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016438660.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SAP

Protein Properties

Length: 366aa MW: 40952.9 Da PI: 6.7454

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016438660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	591	3.1e-180	1	366	79	444
SAP 79 vcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavr 173 vcstwravsrsdllwq+lt +iW+r +llr+tW++eyiy+h+t++nfr+r+y y tl+f pa++++dn++d lsCr+lalsd++la+Gf+dG+v+ XP_016438660.1 1 VCSTWRAVSRSDLLWQNLTLKIWNRRHLLRQTWHNEYIYWHQTSNNFRQRTYIYHTLHFVPANNNDDNNNDGLSCRRLALSDRHLAVGFSDGSVQ 95 8******************************************************************************************** PP SAP 174 lfdletrlhvstflpqhrdrlGrfsravsGivisd.srlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGr 267 lf+l tr+h+stf+pq rdrlGr+sravsGi++sd ++lvfa+ldGdihvav g aa++rra+lGdvvndGalvdfaG+++WwvGlyaGvpGr XP_016438660.1 96 LFHLPTRVHLSTFHPQLRDRLGRYSRAVSGIILSDeNQLVFASLDGDIHVAVXGG--AAPPRRAHLGDVVNDGALVDFAGCDQWWVGLYAGVPGR 188 *****************************98358*********9888..78******************************** PP SAP 268 afhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvds 362 afhiW++eteel+fvGG ltdPeavmGWh+lteltelv r+r+t +++avaCt lrlvv++lrnqg++++e+++++Gliv+s+da+ne +v+vd XP_016438660.1 189 AFHIWNSETEELIFVGGDLTDPEAVMGWHLLTELTELVSRIRLTTQDAAVACTGLRLVVINLRNQGLIIQERSFQQGLIVGSFDATNELLVAVDG 283 ******************************************************************************************* PP SAP 363 rGvatvrrvenleevcrfrvrg.aqrgvlgCvng.gyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssd 444 + vatvr+ve+lee crf+vrg +qrgv+gC+n gya++y ggv+rvW +++ + ylyslrer+gevna++a++rh+ ++ssd XP_016438660.1 284 QSVATVRQVEDLEEACRFNVRGaSQRGVVGCMNSsGYAVMYVGGVIRVWAVQNGA-YLYSLRERIGEVNAILANERHIVACSSD 366 ******************9******549***********9976.***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.1280.50	2.0E-4	1	73	No hit	No description
SuperFamily	SSF50978	3.42E-13	38	143	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.7E-9	74	144	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF50978	3.42E-13	191	366	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.7E-9	192	366	IPR015943	WD40/YVTN repeat-like-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
VCSTWRAVSR SDLLWQNLTL KIWNRRHLLR QTWHNEYIYW HQTSNNFRQR TYIYHTLHFV 60 PANNNDDNNN DGLSCRRLAL SDRHLAVGFS DGSVQLFHLP TRVHLSTFHP QLRDRLGRYS 120 RAVSGIILSD ENQLVFASLD GDIHVAVXGG AAPPRRAHLG DVVNDGALVD FAGCDQWWVG 180 LYAGVPGRAF HIWNSETEEL IFVGGDLTDP EAVMGWHLLT ELTELVSRIR LTTQDAAVAC 240 TGLRLVVINL RNQGLIIQER SFQQGLIVGS FDATNELLVA VDGQSVATVR QVEDLEEACR 300 FNVRGASQRG VVGCMNSSGY AVMYVGGVIR VWAVQNGAYL YSLRERIGEV NAILANERHI 360 VACSSD

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

VCSTWRAVSR SDLLWQNLTL KIWNRRHLLR QTWHNEYIYW HQTSNNFRQR TYIYHTLHFV  60
PANNNDDNNN DGLSCRRLAL SDRHLAVGFS DGSVQLFHLP TRVHLSTFHP QLRDRLGRYS  120
RAVSGIILSD ENQLVFASLD GDIHVAVXGG AAPPRRAHLG DVVNDGALVD FAGCDQWWVG  180
LYAGVPGRAF HIWNSETEEL IFVGGDLTDP EAVMGWHLLT ELTELVSRIR LTTQDAAVAC  240
TGLRLVVINL RNQGLIIQER SFQQGLIVGS FDATNELLVA VDGQSVATVR QVEDLEEACR  300
FNVRGASQRG VVGCMNSSGY AVMYVGGVIR VWAVQNGAYL YSLRERIGEV NAILANERHI  360
VACSSD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608214.1	0.0	PREDICTED: transcriptional regulator STERILE APETALA-like
Refseq	XP_016438660.1	0.0	PREDICTED: transcriptional regulator STERILE APETALA-like, partial
Swissprot	Q9FKH1	1e-144	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A1S3XFL5	0.0	A0A1S3XFL5_TOBAC; transcriptional regulator STERILE APETALA-like
STRING	XP_009608214.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4099	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	1e-138	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]