PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016438666.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 485aa MW: 53965.9 Da PI: 6.6879

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016438666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	301	348	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016438666.1 301 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 348 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.05E-10	295	352	No hit	No description
SuperFamily	SSF47459	2.62E-17	295	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	297	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-17	297	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	301	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-11	303	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MEKGNLFTND GNTTIGNYGL EIQENEQIQN CFFNPNWENS DPFESALSSM VSSPNANIPN 60 NSSGDNFVLR ELIGRLGSIC NSREMSPNSN MINSSTNNSC YTTPLNSPPK LNLSMMGNLS 120 HNQLPQFSAD PGFAERAAKF SCFANKTFKS FNEAELLQHN RQIVAQPNLE SGKLSRVSSN 180 QSIKVSSGSQ IQEFKDVNLA TKNSEFGDSR ENSSVSEQIP VGENDTNSRK RKSISKGKSK 240 NANVSLEKNE SNAKRSKSEE NNGNDKAKEE EKAAKKEEKA VPEPPKDYIH VRARRGQATD 300 AHSLAERVRR EKISERMKLL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT 360 VNPRMDFNME ALLSKDMFQS RGSLAQNMYS SETSAQAFPY GFQSQPGQNF HKGTEFPFPI 420 NSLNNNLARN SNMQLPSLDG YVESTPQVPP FFEDDLNSVV QMGFGQNQNQ SYPGNIPTSQ 480 MKVEL

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MEKGNLFTND GNTTIGNYGL EIQENEQIQN CFFNPNWENS DPFESALSSM VSSPNANIPN  60
NSSGDNFVLR ELIGRLGSIC NSREMSPNSN MINSSTNNSC YTTPLNSPPK LNLSMMGNLS  120
HNQLPQFSAD PGFAERAAKF SCFANKTFKS FNEAELLQHN RQIVAQPNLE SGKLSRVSSN  180
QSIKVSSGSQ IQEFKDVNLA TKNSEFGDSR ENSSVSEQIP VGENDTNSRK RKSISKGKSK  240
NANVSLEKNE SNAKRSKSEE NNGNDKAKEE EKAAKKEEKA VPEPPKDYIH VRARRGQATD  300
AHSLAERVRR EKISERMKLL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT  360
VNPRMDFNME ALLSKDMFQS RGSLAQNMYS SETSAQAFPY GFQSQPGQNF HKGTEFPFPI  420
NSLNNNLARN SNMQLPSLDG YVESTPQVPP FFEDDLNSVV QMGFGQNQNQ SYPGNIPTSQ  480
MKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	SRKRKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016438666.1	0.0	PREDICTED: transcription factor bHLH62-like
TrEMBL	A0A1S3XF90	0.0	A0A1S3XF90_TOBAC; transcription factor bHLH62-like
STRING	XP_009788675.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-85	bHLH family protein