PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016438751.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 186aa MW: 20374.5 Da PI: 10.562

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016438751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	259.8	1.6e-79	31	186	145	301
GAGA_bind 145 kekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGal....rqCYkWGnGGWqSaCC 235 +k+ k+q k+pk+k k+kk ++ +k +++++ +r++a++ks ++v+ng+++D+s +P+PvCsCtG+ +qCY+WG+GGWqSaCC XP_016438751.1 31 AKKRGAGKSQLLKSPKSK---KAKKATRIPKVESTPSV--PRARAPRKSAEVVINGITMDISVIPIPVCSCTGVAqxaaQQCYRWGCGGWQSACC 120 333444444444555555...55554445544444444..79*****************************8522337*********** PP GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 tt++S yPLP++tkrrg+RiagrKmS gaf+k+LekLa+eGy++sn++DLk +WAkHGtnkfvtir XP_016438751.1 121 TTNLSSYPLPMNTKRRGSRIAGRKMSLGAFTKVLEKLASEGYNFSNAIDLKPYWAKHGTNKFVTIR 186 ***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.1E-80	1	186	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.8E-83	4	186	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MQIHEQPNLV KVEPDPQLEE VCLERDIGGL AKKRGAGKSQ LLKSPKSKKA KKATRIPKVE 60 STPSVPRARA PRKSAEVVIN GITMDISVIP IPVCSCTGVA QXAAQQCYRW GCGGWQSACC 120 TTNLSSYPLP MNTKRRGSRI AGRKMSLGAF TKVLEKLASE GYNFSNAIDL KPYWAKHGTN 180 KFVTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016438751.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE3-like
Swissprot	P0DH88	2e-63	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	2e-63	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	A0A1S3XFH8	1e-134	A0A1S3XFH8_TOBAC; protein BASIC PENTACYSTEINE3-like
STRING	XP_009761371.1	1e-120	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68120.1	5e-64	basic pentacysteine 3

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]