PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438801.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 365aa    MW: 40674.8 Da    PI: 4.1971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-192069255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  XP_016438801.1 20 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 69
                    69*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.9812077IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-192077IPR016177DNA-binding domain
SMARTSM003802.3E-352083IPR001471AP2/ERF domain
CDDcd000182.41E-322076No hitNo description
Gene3DG3DSA:3.30.730.105.8E-282076IPR001471AP2/ERF domain
PfamPF008473.0E-142069IPR001471AP2/ERF domain
PRINTSPR003671.5E-82132IPR001471AP2/ERF domain
PRINTSPR003671.5E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVKEADGAAT QSGAQRARNR YVGVRQRPSG RWVAEIKDTI QKIRVWLGTF DTAEEAARAY  60
DEAACLLRGA NTRTNFWPCS LSNSSSTSAL PPKITNILLT RLKERNNSLT AADVADSSKS  120
CSVPEIGRQQ QNHQEKFGEN VSDFSDSLYA DYLNCPDDHI VTDSNTIANV SATTTDFSSW  180
ADFIQPVNNF QSSNGEIIEV GDKEEEIGEA SNTDVLEDIE SNIDFQFLDE IGSCYYSPFE  240
IAEELSSEKM EHGMVYGEET SVVSEAMRRM NYERTFSASL YAFNGITECL KLKMKSGGVT  300
QWETSEQLST LRNACKKNQE SEECNVEMTE KKDEEAVAFS SMESAYESEL SLWSSIDLPP  360
ICFVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1419761371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769291.10.0PREDICTED: ethylene-responsive transcription factor ERF013-like
RefseqXP_016438801.10.0PREDICTED: ethylene-responsive transcription factor ERF013-like
TrEMBLA0A1S3XFN80.0A0A1S3XFN8_TOBAC; ethylene-responsive transcription factor ERF013-like
TrEMBLA0A1U7VWG00.0A0A1U7VWG0_NICSY; ethylene-responsive transcription factor ERF013-like
STRINGXP_009769291.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-22related to AP2 11