PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016439029.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 268aa MW: 29015 Da PI: 4.9109

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016439029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.2	1.9e-15	23	83	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ XP_016439029.1 23 RSRWNPKPEQILILESIFNSgMVNPPKDETVRIRKILeqfgAVGDANVFYWFQNRRSRSRR 83 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.2	9.6e-35	22	85	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q XP_016439029.1 22 VRSRWNPKPEQILILESIFNSGMVNPPKDETVRIRKILEQFGAVGDANVFYWFQNRRSRSRRRQ 85 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.33E-13	17	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-8	18	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.143	19	84	IPR001356	Homeobox domain
SMART	SM00389	2.6E-6	21	88	IPR001356	Homeobox domain
Pfam	PF00046	3.9E-13	23	83	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MENEAQDSTS SNQSNSERNE PVRSRWNPKP EQILILESIF NSGMVNPPKD ETVRIRKILE 60 QFGAVGDANV FYWFQNRRSR SRRRQRQIQA SLNATSDNSR SGGEQAAKCS SGGAIQFDTS 120 TGNFGPSAIS FPMAAPSNYL VLGSSSPSSS SCGGDMENAN DGTNGLFPFS GQMGLPKIEQ 180 NSSVSSILCS PADNANLHYQ TGAEVVYVSG FITVFINGVA TEVPRGPLDM KSMFGQEDLA 240 LYHSSGVPVP VNEYGFVVQS LQHGESYF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609298.2	0.0	PREDICTED: WUSCHEL-related homeobox 11 isoform X1
Swissprot	Q6X7J3	2e-66	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A1S3XGR5	0.0	A0A1S3XGR5_TOBAC; WUSCHEL-related homeobox 11-like
STRING	XP_009609298.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-67	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]