PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016439162.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 233aa MW: 26465.1 Da PI: 9.6892

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016439162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.9	5.6e-23	31	81	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rq t+skR+ i KKA+EL vLCd++va+++fs+tg+l yss XP_016439162.1 31 KKIENSTSRQQTYSKRKDSIVKKANELAVLCDTDVALLMFSPTGQLTSYSS 81 68***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.301	23	83	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-29	23	82	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-25	24	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-20	25	45	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	25	79	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-21	32	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-20	45	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-20	60	81	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MHFSVRRRTT THLTSSSSLH PLMGRNKLVM KKIENSTSRQ QTYSKRKDSI VKKANELAVL 60 CDTDVALLMF SPTGQLTSYS SRGSVEDIML RVVNRPGELH RRPIPNEQHF SQRLTQLKYE 120 SEMVEKIAIA EAHEEKLNKL NQRLSEAREN IRYYEPQVEY INSVREAVAC QQFLMGAMGR 180 IQQLKAKLLG GEVLQRNENV EVASVNAEDT AATANGSSSS NPNWYLTSVY ISF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016439162.1	1e-174	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
TrEMBL	A0A1S3XHI9	1e-173	A0A1S3XHI9_TOBAC; agamous-like MADS-box protein AGL66 isoform X1
STRING	XP_009776411.1	1e-148	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5292	18	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	1e-29	AGAMOUS-like 67