PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439200.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 215aa    MW: 24292.5 Da    PI: 10.0406
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.5e-3247104359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v+YkeClkNhAas+Ggh+vDGCgEf+ps++++ +++++lkC  CgCHRnFHRre+++
  XP_016439200.1  47 VVTYKECLKNHAASIGGHTVDGCGEFIPSPSATaADPTSLKCDVCGCHRNFHRREPDD 104
                     689***************************99999********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2248105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-2748102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-3049101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.53850101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.7E-28126195IPR009057Homeodomain-like
SuperFamilySSF466891.91E-18127194IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-24133189IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDSTCSIPTP TPIPTKTQVP LIKPLSFTNV TSKKHHQVHN HQPPSAVVTY KECLKNHAAS  60
IGGHTVDGCG EFIPSPSATA ADPTSLKCDV CGCHRNFHRR EPDDDFMDIR HHHAQVATPA  120
TPTALKPENP RRRRRFRTKF SQEQKNKMYS FSEKLGWRLQ KCDEAKVDEF CNEIGVGKGV  180
FRVWMHNNKS TLGKKDFQNA NNSTRPYPTT TNSKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-201341911875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788413.11e-162PREDICTED: zinc-finger homeodomain protein 9-like
RefseqXP_016439200.11e-162PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG03e-55ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S3XGW01e-161A0A1S3XGW0_TOBAC; zinc-finger homeodomain protein 9-like
TrEMBLA0A1U7XC141e-161A0A1U7XC14_NICSY; zinc-finger homeodomain protein 9-like
STRINGXP_009788413.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-53homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]