PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439307.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 137aa    MW: 15915.5 Da    PI: 10.9267
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.42.3e-1328107191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY+e+A+ +GF ++k+ s+k+   + +   ++ C ++ k+++++          +++r +C+a+++  +e++g w+ +k++++HnH+l p
  XP_016439307.1  28 DFYKEHARLLGFCIVKRISNKK-GGDIVRYVQYGCDRSRKPRNKH----------VTKRRNCRARINEILEENGSWRFSKVVKKHNHHLEP 107
                     6****************99997.66668999*****998887765..........55999********9*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1028107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPNEFNEEDL IIGPITGMQF SSKDVTFDFY KEHARLLGFC IVKRISNKKG GDIVRYVQYG  60
CDRSRKPRNK HVTKRRNCRA RINEILEENG SWRFSKVVKK HNHHLEPVLS RLMAGHRSLS  120
KSLKRPLAAK DITGLRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439307.18e-99PREDICTED: protein FAR1-RELATED SEQUENCE 8-like
TrEMBLA0A1S3XHZ52e-97A0A1S3XHZ5_TOBAC; protein FAR1-RELATED SEQUENCE 8-like
STRINGXP_009778050.11e-83(Nicotiana sylvestris)
STRINGXP_009797803.12e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.16e-11FAR1 family protein