PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439609.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 334aa    MW: 37669.4 Da    PI: 6.5884
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.91.3e-081134124
             NAM  1 lppGfrFhPtdeelvveyLkkkve 24
                    +ppGfrFhPt+eel+++yL+kk++
  XP_016439609.1 11 VPPGFRFHPTEEELLHYYLRKKCS 34
                    69*******************986 PP
2NAM639.4e-20378579128
             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++g+Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl
  XP_016439609.1  37 AAGFWKATGRDKVIHS-NCKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 85 
                     57************99.8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.0681115IPR003441NAC domain
SuperFamilySSF1019412.35E-338115IPR003441NAC domain
PfamPF023657.7E-161285IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNLSVNGQSQ VPPGFRFHPT EEELLHYYLR KKCSLXAAGF WKATGRDKVI HSNCKRIGMR  60
KTLVFYKGRA PHGQKSDWIM HEYRLDDNTN PQEAVNASES SSPEEGWVVC RVFKKKNYHK  120
ALESPHQSSS AVSIMNSRTL IQKPNNDGVL DQILMYMGRS SCKQQDHENK HNINLVNNIN  180
NIHLDDHHMQ INSNSFINSS GSRFLHLPGL ENHHSPTTNM DDDVSSLQLI QQDCSFGHEN  240
MLTETEPSSG AGPSDWVALD RLVASQLNGH VETSNNLYFP LHNNGLQLRT NGRPNDEDDA  300
FSQSQAAHDD DVEFWSYARS SSSSPSDPLC HLSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-22811717170NAC domain-containing protein 19
3swm_B1e-22811717170NAC domain-containing protein 19
3swm_C1e-22811717170NAC domain-containing protein 19
3swm_D1e-22811717170NAC domain-containing protein 19
3swp_A1e-22811717170NAC domain-containing protein 19
3swp_B1e-22811717170NAC domain-containing protein 19
3swp_C1e-22811717170NAC domain-containing protein 19
3swp_D1e-22811717170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439609.10.0PREDICTED: NAC domain-containing protein 43-like
TrEMBLA0A1S3XID10.0A0A1S3XID1_TOBAC; NAC domain-containing protein 43-like
STRINGXP_009774438.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.18e-64NAC family protein