PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439637.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 229aa    MW: 26105.8 Da    PI: 8.6385
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.9e-171561147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ien+  r+vtfskRr g+ K A+EL  LC++++ +++fs+tgk +
  XP_016439637.1 15 KKIENEDDRYVTFSKRRSGLYKQASELVKLCNIDIGIVLFSPTGKPF 61
                    68******************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-20766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.385767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-16929IPR002100Transcription factor, MADS-box
PfamPF003192.0E-211663IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEGKKTRGRQ SIPMKKIENE DDRYVTFSKR RSGLYKQASE LVKLCNIDIG IVLFSPTGKP  60
FSFFHPTSEA IIDRFLNPNM QLSESTRLVA AHARHKVNQL NNRRELFDNI KEATSAESLL  120
LDNMKENSER YRWESIEQFN ADEVKKTRSK IGLRGSSCSS SITASAWPGS GTAWRGWGVL  180
KICRIDRLLL GLGIDIPWHE DWIEMSLASM REQEDGVVEP HLVQVVAHC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439637.11e-171PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S3XIY51e-170A0A1S3XIY5_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009765100.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-28AGAMOUS-like 61