PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439721.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 217aa    MW: 24414.3 Da    PI: 7.6164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.82.8e-10145166122
                     ---SS-EEEEEEE--TT-SS-E CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                     ldDg+nWrKYGqK++ g+++pr
  XP_016439721.1 145 LDDGFNWRKYGQKDILGAKYPR 166
                     59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081110.108140186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-7142166IPR003657WRKY domain
SuperFamilySSF1182901.31E-7143167IPR003657WRKY domain
SMARTSM007741.5E-5145185IPR003657WRKY domain
PfamPF031068.8E-7146166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MENYGADNNG ELNRIISELT QGKDLVHQLQ LQLNAPYSSS SSSPETTRDF LLHNIQSKFD  60
KALSLLQYST GDTSNSLLPH SNSVPIPYFG RSESPPSFTA SPPHSEDSDR DLEPKDPATR  120
KRKSNTPRWT KQVQICPGVP VEGTLDDGFN WRKYGQKDIL GAKYPRLRVG AVETVSYRNV  180
GTTDPCEDIT GVHFDMSKVV WLQNKFKEPM KIPQYLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123TRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439721.11e-162PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S3XIH31e-160A0A1S3XIH3_TOBAC; probable WRKY transcription factor 41
STRINGXP_009801586.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-20WRKY family protein