PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016439864.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 178aa MW: 20489.8 Da PI: 9.0752

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016439864.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.5	2.7e-11	12	54	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+ ++k+ +v +s+ ++ + K A LS+LC++++a+iifs t XP_016439864.1 12 KFLKDKRVEKVALSNKQKALSKRAMDLSTLCGIDIAIIIFSIT 54 567899999*******************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0039	4	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.568	4	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	6	26	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-14	6	84	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-9	15	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MTYQMKNKSE KKFLKDKRVE KVALSNKQKA LSKRAMDLST LCGIDIAIII FSITAEPFLF 60 GNPNVESVVE RFLPAKQPFY NMSSRETTHE KLEVCGKKDK MKKKEKKATN EEEKGKSTLE 120 IFNPTNLERL EKLMQEIDEL EKDLTQKIDE LQLEIGAKES KSVLEMNVTN PSTNWLSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016439864.1	1e-126	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S3XJ38	1e-125	A0A1S3XJ38_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009586738.1	2e-92	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	7e-08	AGAMOUS-like 61