PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440259.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 361aa MW: 37902.2 Da PI: 11.4126

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	18	40	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C k Fs++ L H+ +H XP_016440259.1 18 YRCDNCRKLFSSSQALAGHQHLH 40 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.14E-5	17	43	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-4	18	40	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.783	18	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	40	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MAHEPHNHKI TGQGIVVYRC DNCRKLFSSS QALAGHQHLH KVQGTWVKGH HHKFLLPPDY 60 LPDLNRFIAR NNKSITVRIG GRGKPIVQEP LAVAPAPALA TPLLAQAPAS APIGPRHGRP 120 QSVIQPQPTV QVPLAAALAT ATPLLAQASP LPLAVAPAPA PAPAPAPAPA TPLLAQSLAL 180 PLAAASSAAT PLLAQAPAQA LPLAVAPALA TPLLAQAPTL VARRRGKPRS IIRPQPMVQA 240 PLATAPAPAT PLLVQAPAPV ARPRGRPRSI IRSQPMVQVP LAASPTPATP LLVQGPDPIA 300 RLENQLALYQ NRLNYFKVVA ARREESTHSS TGSTSTITAD KTNGKKKVEE EVEELDLELR 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MAHEPHNHKI TGQGIVVYRC DNCRKLFSSS QALAGHQHLH KVQGTWVKGH HHKFLLPPDY  60
LPDLNRFIAR NNKSITVRIG GRGKPIVQEP LAVAPAPALA TPLLAQAPAS APIGPRHGRP  120
QSVIQPQPTV QVPLAAALAT ATPLLAQASP LPLAVAPAPA PAPAPAPAPA TPLLAQSLAL  180
PLAAASSAAT PLLAQAPAQA LPLAVAPALA TPLLAQAPTL VARRRGKPRS IIRPQPMVQA  240
PLATAPAPAT PLLVQAPAPV ARPRGRPRSI IRSQPMVQVP LAASPTPATP LLVQGPDPIA  300
RLENQLALYQ NRLNYFKVVA ARREESTHSS TGSTSTITAD KTNGKKKVEE EVEELDLELR  360
L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440259.1	0.0	PREDICTED: vegetative cell wall protein gp1-like
TrEMBL	A0A1S3XK96	0.0	A0A1S3XK96_TOBAC; vegetative cell wall protein gp1-like
STRING	XP_009619950.1	1e-136	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6643	8	21