PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440503.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 494aa MW: 54045.2 Da PI: 7.3076

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440503.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217	4.1e-67	125	278	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklss 93 ++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ +++++k +r+ + ++s+l +t+l+s XP_016440503.1 125 AGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQQKERHdqlhlDHNNNKPERQREDPSASSLVCTRLPS 219 5689*************************************************9998887777788755555555555668889999999999 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s le+ ++P++vss+avf+c+++ss++d+e++laYq+av+igGhvfkGiL dqG+e+ XP_016440503.1 220 NTSG--LEVGKFPAKVSSAAVFQCIQMSSIEDAEDQLAYQAAVNIGGHVFKGILCDQGPES 278 8765..89999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-63	126	277	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.0E-27	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.0E-24	228	276	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MANFFSLDGR GSSSQDQQQE ISSSHHRINN RPVPTEISSE SWFLYRNDHN QEMPTYKGFE 60 LWQNTTPQHQ PEQQQQFRHP VYPLQDLYST AVGLGVGPSQ SGFDIFGGDQ EASRSGFVMM 120 RSGGAGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLSAL 180 QQQQKERHDQ LHLDHNNNKP ERQREDPSAS SLVCTRLPSN TSGLEVGKFP AKVSSAAVFQ 240 CIQMSSIEDA EDQLAYQAAV NIGGHVFKGI LCDQGPESEY NNNMAAAGDT SSGGGSGSAG 300 VQHHHNSAAT AIIASGGAAA AAEASNFLDP SLFPAPLSTF MSAGTIFNLM FLLPRTIMSS 360 SNPNPRRFPI IDNLSLAPIR SRRRGMLRSL GSSSSRVPSV PSSSSTPPSR TRGSLSQRSS 420 SRGKEPTEPL REPLVDEIVP AELSFYNDRE SLKNQLSSLV EACVVVSLTG FCNCYFSSFL 480 IFESATELMF LDVC

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MANFFSLDGR GSSSQDQQQE ISSSHHRINN RPVPTEISSE SWFLYRNDHN QEMPTYKGFE  60
LWQNTTPQHQ PEQQQQFRHP VYPLQDLYST AVGLGVGPSQ SGFDIFGGDQ EASRSGFVMM  120
RSGGAGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLSAL  180
QQQQKERHDQ LHLDHNNNKP ERQREDPSAS SLVCTRLPSN TSGLEVGKFP AKVSSAAVFQ  240
CIQMSSIEDA EDQLAYQAAV NIGGHVFKGI LCDQGPESEY NNNMAAAGDT SSGGGSGSAG  300
VQHHHNSAAT AIIASGGAAA AAEASNFLDP SLFPAPLSTF MSAGTIFNLM FLLPRTIMSS  360
SNPNPRRFPI IDNLSLAPIR SRRRGMLRSL GSSSSRVPSV PSSSSTPPSR TRGSLSQRSS  420
SRGKEPTEPL REPLVDEIVP AELSFYNDRE SLKNQLSSLV EACVVVSLTG FCNCYFSSFL  480
IFESATELMF LDVC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440503.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-154	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S3XKR0	0.0	A0A1S3XKR0_TOBAC; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009788493.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-65	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]