PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440597.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 530aa    MW: 59275.1 Da    PI: 6.6821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-13348393454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N++f+ Lr+llP+      +K +Ka++L  ++eY++sL
  XP_016440597.1 348 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYLSSL 393
                     68899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.40E-13344398No hitNo description
PROSITE profilePS5088815.529344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17345414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16348411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11348393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-14350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDSIFFLEEG DRAVFLLKIM ESLGCNYICL WQYYQPSNCF MSLGGIYNGD SDVAQRLFQE  60
YRHSWLIMDN GRIPGLAFKN NVPYMELQFA DFQSHASNPV QLQFYQEAGI KTVICMGCSI  120
GEIEVGMTSS PQVNLEMGLK NLFADYFSRQ AVAPAAAVAT RGIPKQLLPI DQNRPSSSSS  180
FSIDSPGEYS SLLFNVASKS PYVPEQPRTD TFSDQTIRPI PPVSATATPY QQAIQTLNQI  240
QGIQLPTLET EDVALTRAYL AVMTSPSSSS SSRQSRENLP TQIATQKATA FTRFRSGLGP  300
NLPIATATTR RQNMFRRSIN FFRNLNMMRS RQEQMQPNPR APTSTQVHHM ISERRRREKL  360
NDSFQLLRSL LPPGTKKDKA SVLASTTEYL SSLKGQVEEL SKKNEMLEAQ LLQPQNKSSF  420
EQAIISSSAG GNERIAVEIT NVGESTSESR TVDLQISVTR ECSILDLVTR LLEFLKRDNN  480
VNLESVAANT RSVVQSEPVT HIILRVRIEG SEWDESSFQE GVKRVVDDLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357ERRRRE
2353358RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440597.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A1S3XLQ60.0A0A1S3XLQ6_TOBAC; putative transcription factor bHLH041
STRINGXP_009793632.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-64bHLH family protein