PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440614.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 199aa MW: 21670.5 Da PI: 5.7956

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440614.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96	4e-30	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++ +++a+pe++r+++++sl++eA+ r+ +Pv Gavg++++++++++q+ XP_016440614.1 2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMAFISAVPENRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWHVCQK 96 6***********************99*************************************************************** PP DUF260 91 kaelallk 98 ++e++l++ XP_016440614.1 97 AVETVLVG 104 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.23	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMA FISAVPENRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVET VLVGGNLRPV FAGTLTPTAY 120 MDETFESFRC GGAWDIPNQF SNKSGSFIDG SDHTDTTDWV GLEKRWNTMS SIGSETELSD 180 VSLGLDSGNK EPKLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783238.1	1e-146	PREDICTED: LOB domain-containing protein 38-like isoform X1
Refseq	XP_016440614.1	1e-146	PREDICTED: LOB domain-containing protein 38-like isoform X1
Swissprot	Q9SN23	1e-54	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A1S3XLA5	1e-144	A0A1S3XLA5_TOBAC; LOB domain-containing protein 38-like isoform X1
TrEMBL	A0A1U7WXA8	1e-144	A0A1U7WXA8_NICSY; LOB domain-containing protein 38-like isoform X1
STRING	XP_009783238.1	1e-145	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	5e-57	LOB domain-containing protein 38