PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440818.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 521aa    MW: 58025.2 Da    PI: 8.4372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-173801598
                    -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     l +p kf+++++g    s t  l  +sg+sW + l   +++++ ++ +GW +Fvk++ L++gD +vF++dg+  f  +v +f+
  XP_016440818.1  3 KLKIPSKFIKHMEGR--ASGTAFLVGPSGNSWPMDL--IQQDDGLFFHNGWASFVKDHCLESGDALVFRYDGDLHF--TVLAFD 80
                    589******777777..4459***************..99999***************************997666..787776 PP
2B357.52.4e-18218312198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f kv+++ +v+ s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e  l+v
  XP_016440818.1 218 FMKVMKRFNVSGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELVHKCE--LRV 308
                     889999999*****************6..34999****************77566666699***********************998554..588 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +v+r
  XP_016440818.1 309 HVLR 312
                     8877 PP
3B348.71.3e-154134951297
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      s  l +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g  + e++v+++
  XP_016440818.1 413 GSYTLKVPYQFSMEHL--PNCRTEIVLRNLKGECWTVNSIPTMKVQTlHTFCGGWSAFVRDNDIQMGDICIFELVG--KYEMRVHIC 495
                     5567899****99996..45889****************8888887789999*********************998..566688887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.9E-9182IPR003340B3 DNA binding domain
PROSITE profilePS5086315.326182IPR003340B3 DNA binding domain
CDDcd100173.67E-17380No hitNo description
PfamPF023624.0E-15381IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21384IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-23210312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-24211313IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-20216312No hitNo description
PROSITE profilePS5086313.803218314IPR003340B3 DNA binding domain
SMARTSM010194.7E-16218314IPR003340B3 DNA binding domain
PfamPF023625.1E-16218312IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-24397495IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-23397495IPR015300DNA-binding pseudobarrel domain
CDDcd100178.62E-20400495No hitNo description
SMARTSM010192.7E-11402498IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717402498IPR003340B3 DNA binding domain
PfamPF023625.0E-13405495IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MQKLKIPSKF IKHMEGRASG TAFLVGPSGN SWPMDLIQQD DGLFFHNGWA SFVKDHCLES  60
GDALVFRYDG DLHFTVLAFD ESSCEKEAAY NADCSQGATN LYNLALKKRD RGNSALLDCI  120
VEGVPKKMRS TQSPSECTAE DAVCSNGRSY ASSFLNEIEN AGNASNNTVT IAVPSQTEIV  180
CSNPEVKTGN GTSEEPMWLS AQEAEKVARS FTSSFPNFMK VMKRFNVSGS YTLNIPYQFA  240
TEHLPKCKVK ILLHNLKGKT WTVNSIPTTR VQTSHTFCGG WLSFVRDNNI DLGDICIFEL  300
VHKCELRVHV LRVEKEGNDY SSKQVAKAKT YDKRGSAHGK EKHGNMLKSH QLHLSKICSG  360
DSVIRKPAQV KQGSFTKSCM SMKSVPEEKL AAESFISNFP HFVRIMKKFN ISGSYTLKVP  420
YQFSMEHLPN CRTEIVLRNL KGECWTVNSI PTMKVQTLHT FCGGWSAFVR DNDIQMGDIC  480
IFELVGKYEM RVHICAIGKK GLDYRNGITS NESAILASLT S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145241e-139CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9754431e-139HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-139HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440818.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X4
TrEMBLA0A1S3XLM20.0A0A1S3XLM2_TOBAC; B3 domain-containing protein Os01g0723500-like isoform X4
STRINGXP_009781392.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-20B3 family protein