PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441644.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 696aa    MW: 78383.2 Da    PI: 9.3339
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.3e-24151251299
                     EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      k+ltpsdv+++g l++pk+ a+e+       +  +   ++l+ +d++g +W++++ yr++s+r+++++GW++Fv+a++L +gD+++F   + ++
  XP_016441644.1 151 SKKLTPSDVNTHGGLSIPKQLADECfpplnndQDFP--AQDLVAKDLNGLEWKFRHVYRGQSRRHLIRNGWSRFVSAKKLVAGDTLIFV--RGKN 241
                     599************************998653333..348************************************************..3489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      el+v v+r+
  XP_016441644.1 242 YELYVAVRRA 251
                     999**99986 PP
2Auxin_resp84.52.3e-28276363183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+s++++F+++Y+P+++++ F++++++++ka ++ + vGm f m fe+ +    r+     sGt+v+v+d+dp+rWp+S Wr+Lk
  XP_016441644.1 276 AYHAVSSGTMFTIYYRPWTCPAAFIIPYNQYMKASEIDYEVGMTFNMPFESHELDCGRTvcpifSGTIVDVKDFDPIRWPGSDWRCLK 363
                     689************************************************98876654457789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-29141263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-36143264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.888150252IPR003340B3 DNA binding domain
CDDcd100173.18E-21150250No hitNo description
SMARTSM010193.1E-22150252IPR003340B3 DNA binding domain
PfamPF023621.8E-21151251IPR003340B3 DNA binding domain
PfamPF065071.7E-25276363IPR010525Auxin response factor
PfamPF023096.0E-7599682IPR033389AUX/IAA domain
PROSITE profilePS5174516.751604686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
LLVRDHLLGW LDKSTDLKAN FNKSAGFSLS KIALWSSLGR NSGLHRELWL ACSGPLVIVP  60
SSGDMVFYYP QGHIEQIEAC MNEDGLMPMP AYNVPYKILC RVVSVRLQAE ANTDEVFAEI  120
TLLPHLGTRE PILAERSPLF SRAKTDVHTY SKKLTPSDVN THGGLSIPKQ LADECFPPLN  180
NDQDFPAQDL VAKDLNGLEW KFRHVYRGQS RRHLIRNGWS RFVSAKKLVA GDTLIFVRGK  240
NYELYVAVRR AKKQQTSSST SILSSHYMQH GMLSNAYHAV SSGTMFTIYY RPWTCPAAFI  300
IPYNQYMKAS EIDYEVGMTF NMPFESHELD CGRTVCPIFS GTIVDVKDFD PIRWPGSDWR  360
CLKVKWNHAK LMPVRPERVS PWSIVAIGIT KRKRRSFSSY PSKAQPLDPA NPFGVKDCLM  420
KSSVEHSPPW NSRVLQGQEK AVNAYEENAF RRPHDLRQPP QRKLRWRRGQ VRLENQQHNH  480
ILDPWLDFIG KEVHGTSPSS NGFSNLQSSK IPSFASESLS IPKIVDYRNS NSKGNVESDV  540
MGSQPTGGSK LKLFGVDILN GPESPSQHGS KLTHFGSFPA ASKTVNFLEQ SKSTSGNSDT  600
QCSRSCTKVL KYGCALGRSI DMSRVKGYGE LISELDKLFG FEGSLLDGSK DWHVTYQDRE  660
GNTKLLGDYP WSDFQAMVRK MFICPIGADY LADRSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1134338418352Auxin response factor 1
4ldw_A1e-1134338418352Auxin response factor 1
4ldw_B1e-1134338418352Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3402580.0DQ340258.1 Nicotiana tabacum ARF2-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441644.10.0PREDICTED: auxin response factor 2-like, partial
TrEMBLA0A1S3XP510.0A0A1S3XP51_TOBAC; Auxin response factor
STRINGXP_009631858.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1732833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-126auxin response factor 2