PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441868.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 248aa    MW: 28366.5 Da    PI: 8.4495
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-0970106139
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q
   XP_016441868.1  70 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQ 106
                      789*****************77.*********.888754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-1057110IPR009057Homeodomain-like
PROSITE profilePS5129311.5368116IPR017884SANT domain
TIGRFAMsTIGR015574.9E-1068108IPR006447Myb domain, plants
SMARTSM007173.5E-669117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-569106IPR009057Homeodomain-like
PfamPF002492.5E-770104IPR001005SANT/Myb domain
CDDcd001671.30E-572106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVSVYPTPPA GQDFYYIGDP TKMGLPGLHP IQSGSNGAGT LGNLNSSTGS VVPDDHNKKT  60
RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQFYLH LVRANKRICC  120
STKTEITEIT ASFFAVIFLC RIFYQFNIFD LFSFPFSIAV MPDFAQVYRF IGSVFDPSTR  180
DHLQRLKKMD PIDVQTALML MKNLSFNLLS PEFEDHRRLL SSYGLGAEKD KMDHPIKTDF  240
RENAIRAV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1416257e-65JX141625.1 Cestrum nocturnum MYB mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441868.10.0PREDICTED: protein REVEILLE 6-like
SwissprotQ8H0W38e-30RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1S3XPK40.0A0A1S3XPK4_TOBAC; protein REVEILLE 6-like
STRINGXP_009776265.14e-71(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-32MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]