PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441869.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19367 Da    PI: 5.4063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF626.7e-201866149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie+k +r++tf+kRr+g++KKA+EL   Cda++avi fs  g+++ +
  XP_016441869.1 18 KRIEDKAKRHTTFTKRRQGLFKKAKELAKRCDAQAAVITFSLAGNVFAF 66
                    79******************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-241069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.8431070IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-241286IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-171232IPR002100Transcription factor, MADS-box
PfamPF003191.1E-191966IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-173247IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-174768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVKYYYQASM VRTKVEIKRI EDKAKRHTTF TKRRQGLFKK AKELAKRCDA QAAVITFSLA  60
GNVFAFGHPS VDDVVNRYIA ATSAPEEGNE IPVHKEAEKK DKDVVIENNV DQEDEETTSF  120
ELPVGDMGME ELEQLEVAMV QIKKKVVDRI NGIISSSKDE DLGLPYTGLT LN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776268.11e-125PREDICTED: agamous-like MADS-box protein AGL61 isoform X1
RefseqXP_016441869.11e-125PREDICTED: agamous-like MADS-box protein AGL61 isoform X1
TrEMBLA0A1S3XPS31e-123A0A1S3XPS3_TOBAC; agamous-like MADS-box protein AGL61 isoform X1
TrEMBLA0A1U7WC891e-123A0A1U7WC89_NICSY; agamous-like MADS-box protein AGL61 isoform X1
STRINGXP_009776268.11e-124(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.17e-22M-type_MADS family protein