PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441870.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18232.7 Da    PI: 5.1521
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.26e-20957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie+k +r++tf+kRr+g++KKA+EL   Cda++avi fs  g+++ +
  XP_016441870.1  9 KRIEDKAKRHTTFTKRRQGLFKKAKELAKRCDAQAAVITFSLAGNVFAF 57
                    79******************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.843161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-24160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-24377IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-17323IPR002100Transcription factor, MADS-box
PfamPF003199.5E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KAKELAKRCD AQAAVITFSL AGNVFAFGHP  60
SVDDVVNRYI AATSAPEEGN EIPVHKEAEK KDKDVVIENN VDQEDEETTS FELPVGDMGM  120
EELEQLEVAM VQIKKKVVDR INGIISSSKD EDLGLPYTGL TLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776268.11e-117PREDICTED: agamous-like MADS-box protein AGL61 isoform X1
RefseqXP_016441869.11e-117PREDICTED: agamous-like MADS-box protein AGL61 isoform X1
TrEMBLA0A1S3XPS31e-115A0A1S3XPS3_TOBAC; agamous-like MADS-box protein AGL61 isoform X1
TrEMBLA0A1U7WC891e-115A0A1U7WC89_NICSY; agamous-like MADS-box protein AGL61 isoform X1
STRINGXP_009776268.11e-116(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.16e-22M-type_MADS family protein