PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442252.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 263aa    MW: 29837.9 Da    PI: 5.6538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.91.8e-3127357128
             NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ew+fF++rdkky++g+r+nratk gyWkatgkd++v++++ ++vg +ktLvfy+grap g +tdWvmheyrl
  XP_016442252.1   2 EWFFFCPRDKKYPNGSRTNRATKCGYWKATGKDRKVVCHQPAVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 73 
                     8*************************************9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.907196IPR003441NAC domain
SuperFamilySSF1019417.85E-36296IPR003441NAC domain
PfamPF023654.5E-16373IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEWFFFCPRD KKYPNGSRTN RATKCGYWKA TGKDRKVVCH QPAVVGYRKT LVFYRGRAPL  60
GDRTDWVMHE YRLCDDVSQG TPNFQGPFAL CRIIKRNDAS LKTSDTSIAV SNEPVVLTAE  120
TPTQTTYMCN DSNYSTPITS PYEGTNATNF WMSHDMILDS SKECPQGQST RGDYPNYDFP  180
NMTLAQPNDR LEFTSSSSFP SFRGEIELSG DLSSYGCVSP YSVHGNYTGF YGNDDMSYEG  240
YEGWNQANMG DFNGLWSHKD NFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-28210272171NO APICAL MERISTEM PROTEIN
1ut4_B5e-28210272171NO APICAL MERISTEM PROTEIN
1ut7_A5e-28210272171NO APICAL MERISTEM PROTEIN
1ut7_B5e-28210272171NO APICAL MERISTEM PROTEIN
3swm_A5e-28210275174NAC domain-containing protein 19
3swm_B5e-28210275174NAC domain-containing protein 19
3swm_C5e-28210275174NAC domain-containing protein 19
3swm_D5e-28210275174NAC domain-containing protein 19
3swp_A5e-28210275174NAC domain-containing protein 19
3swp_B5e-28210275174NAC domain-containing protein 19
3swp_C5e-28210275174NAC domain-containing protein 19
3swp_D5e-28210275174NAC domain-containing protein 19
4dul_A5e-28210272171NAC domain-containing protein 19
4dul_B5e-28210272171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016442252.10.0PREDICTED: protein NTM1-like 9 isoform X2
SwissprotO496976e-59NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A1S3XQM20.0A0A1S3XQM2_TOBAC; NAC domain-containing protein 86-like isoform X1
TrEMBLA0A1S3XRD90.0A0A1S3XRD9_TOBAC; protein NTM1-like 9 isoform X2
STRINGXP_009624151.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.13e-61NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]