PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442530.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 312aa    MW: 35032.4 Da    PI: 6.1063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12105156155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r+ h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A++++k+L+
  XP_016442530.1 105 QRMIHIAVERNRRKQMNEYLTVLRSLMPSS---YVQRADQASIIGGAINFVKELE 156
                     6999**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.2E-16103172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.56E-12103160No hitNo description
Gene3DG3DSA:4.10.280.101.7E-13104160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.996104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MALETVVYPQ EQLDYFYNKE FYASSSSFPH SISNWESSSC IPMMQNQEKE YYLDISNSSP  60
EAAAACNIVE ENQLFLEAAD TSGGRRKRRR TARGSNKNRE ELENQRMIHI AVERNRRKQM  120
NEYLTVLRSL MPSSYVQRAD QASIIGGAIN FVKELEQHLQ TLEVQKRSST HDQLPENGIS  180
SLPLFADFFS FPQYSTTHSN HVSSSPAAAT NSSELAANNR SVMADIEVNL VDSHANLKIL  240
SKRRPKQLLK ILAGLQCLSL TILHLNVITV DQMVLYTLSA KVEEGCQLTT VEEIAQAVNQ  300
LLAGIQEEAA SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589RKRRR
28590RKRRRT
3105116RMIHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785047.10.0PREDICTED: transcription factor bHLH96-like
RefseqXP_016442530.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T49e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S3XRM70.0A0A1S3XRM7_TOBAC; transcription factor bHLH96-like
TrEMBLA0A1U7WYR00.0A0A1U7WYR0_NICSY; transcription factor bHLH96-like
STRINGXP_009785047.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]