PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442766.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 512aa    MW: 56374.1 Da    PI: 6.6956
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.4e-15226285155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_016442766.1 226 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 285
                     57*******************666664478446*************************98 PP
2AP249.88.5e-16328379155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_016442766.1 328 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 379
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-12226285IPR001471AP2/ERF domain
CDDcd000184.60E-23226295No hitNo description
SuperFamilySSF541717.19E-18226295IPR016177DNA-binding domain
SMARTSM003802.3E-29227299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16227294IPR001471AP2/ERF domain
PROSITE profilePS5103219.44227293IPR001471AP2/ERF domain
PRINTSPR003673.4E-6228239IPR001471AP2/ERF domain
PfamPF008474.5E-10328379IPR001471AP2/ERF domain
CDDcd000181.26E-11328387No hitNo description
SuperFamilySSF541719.15E-18328388IPR016177DNA-binding domain
SMARTSM003801.6E-31329393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18329387IPR001471AP2/ERF domain
PROSITE profilePS5103219.151329387IPR001471AP2/ERF domain
PRINTSPR003673.4E-6369389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MEMLSSSASQ SNSMLQSNMK LAPTFDGSSS ADSHHYYFAD NFFPHAGWSN PKSQVMYTEG  60
EKEVLGLNIN GNDSSIFQNF LDTQIHQQTP PKLEDFLGGD SSSLTQDSSS LTHQIYEQQQ  120
NNGSAVYHQD FKNLAHGFHY QATAAAAFSN NSGSEVDNSV GTEFVSESCN ELAYSQCPPA  180
LSTGALSLAV NTTNTTQCLE KEKAIVAVVD SESCKKITDT FGQRTSIYRG VTRHRWTGRY  240
EAHLWDNSCR REGQARKGRQ VYLGGYDKEE KAARAYDLAA LKYWGPTATT NFPVSNYTQE  300
LEEMKHMSKQ EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF  360
ATEEEAAEAY DIAAIKFRGV NAVTNFEMNR YDVEAIMKSS LPVGGTAKRL KLSLEAEQKS  420
LSSNNQQQTT QSSSSNNSSS NINFGAMPPM SAIPCGVPFD ATAPFYHHNF FHHLQSGNAG  480
ASDTSGAVTT MASAMPLLPS GAEFFIWPHQ SY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782438.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X3
RefseqXP_016442766.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X3
SwissprotQ52QU21e-156AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3XS370.0A0A1S3XS37_TOBAC; AP2-like ethylene-responsive transcription factor AIL6 isoform X3
TrEMBLA0A1U7WV010.0A0A1U7WV01_NICSY; AP2-like ethylene-responsive transcription factor AIL6 isoform X3
STRINGXP_009782436.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-153AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]