PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442778.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 527aa    MW: 58019 Da    PI: 6.9317
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-15242301155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_016442778.1 242 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 301
                     57*******************666664478446*************************98 PP
2AP249.78.9e-16344395155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_016442778.1 344 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 395
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-12242301IPR001471AP2/ERF domain
CDDcd000185.38E-23242311No hitNo description
SuperFamilySSF541717.85E-18242311IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-16243310IPR001471AP2/ERF domain
SMARTSM003802.1E-29243315IPR001471AP2/ERF domain
PROSITE profilePS5103219.44243309IPR001471AP2/ERF domain
PRINTSPR003673.6E-6244255IPR001471AP2/ERF domain
CDDcd000181.50E-11344403No hitNo description
PfamPF008474.6E-10344395IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18344404IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-18345403IPR001471AP2/ERF domain
SMARTSM003801.6E-31345409IPR001471AP2/ERF domain
PROSITE profilePS5103219.151345403IPR001471AP2/ERF domain
PRINTSPR003673.6E-6385405IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSSMAPDNNW LSFSLSSMEM LSSSASQSNS MLQSNMKLAP TFDGSSSADS HHYYFADNFF  60
PHGWSNPKSQ VMYTEGEKEV LGLNINGNDS SIFQNFLDTQ IHQQPPPKLE DFLGGDSSSL  120
TQDSSSLTHH IYEQQQNNGS AVYNQDFKNL AHGFHHQTTA AAAFSNNSGS EVDNSVGTEF  180
VSESCNELAY SQCPPALSTG ALSLAVNTTN TTRCLEKEKA IVAVVDSQSC KKITDTFGQR  240
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQVYLG GYDKEEKAAR AYDLAALKYW  300
GPTATTNFPV SNYTKELEEM KHMTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA  360
RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGVNAVT NFEMNRYDVE AIMKSSLPVG  420
GTAKRLKLSL EAEQKSLSSN NQQQTAQSSS SNNSSNINFG AIPPISAIPC GLPFDTTAPF  480
YHHNFFHHLQ SGNAGASDTS GAASTMAAAM PLLPSGAEFF IWPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016442778.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-162AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3XS560.0A0A1S3XS56_TOBAC; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_009615436.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-146AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]