PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443217.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 157aa MW: 17736.3 Da PI: 6.0165

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.5	1.7e-13	16	63	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien+s r+ +fskRr ++ KA+EL Cd+++ +i+fs+ +k + + XP_016443217.1 16 KIENESDRYASFSKRRSTLYDKASELVGECDVDIGIILFSPANKPHSF 63 69****************************************997776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.811	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-15	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-20	8	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.6E-10	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-18	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.6E-10	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.6E-10	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MEGKKTEGKQ KIPMMKIENE SDRYASFSKR RSTLYDKASE LVGECDVDIG IILFSPANKP 60 HSFFHPTAEA VLDRFKNPVF TMLNLSKLEF MALDISGNNY LPWLLDAEIH LGAKGLGDTI 120 KEGNEALSQD NAKAMIFLGH HLDERLKSEY LTLKDPF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443217.1	1e-114	PREDICTED: MADS-box transcription factor 16-like
TrEMBL	A0A1S3XU43	1e-112	A0A1S3XU43_TOBAC; MADS-box transcription factor 16-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-25	AGAMOUS-like 61