PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443388.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 186aa MW: 21745.8 Da PI: 10.1536

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83.3	2.5e-26	88	142	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt+eLHe+Fv+av++LGG+ +A P++i++ m+v +tl+h+kSHLQkY++ XP_016443388.1 88 KPRMKWTEELHESFVNAVAELGGAWEAKPRAIKRKMQVTAITLYHIKSHLQKYKM 142 79***************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.12E-14	87	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-21	88	142	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.2E-24	88	143	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	90	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MFPLVPFAMN DNSRQYRRIP ILDRQFQEQL NPLPLNNLQG SLANQSHQPL RFLGKLNVMN 60 NYDDNNLRFF DVNVPQVEQE VDQPRLVKPR MKWTEELHES FVNAVAELGG AWEAKPRAIK 120 RKMQVTAITL YHIKSHLQKY KMAQEPDGAR RRKAMSILAF RFFFFLPLTS TTHFALLDSX 180 LDAIDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	88	144	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	88	144	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	88	144	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	88	144	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443388.1	1e-135	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A1S3XTW6	1e-134	A0A1S3XTW6_TOBAC; probable transcription factor KAN4
STRING	XP_009620178.1	1e-111	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15338	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	3e-20	G2-like family protein